Wednesday, August 06, 2014

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Identifying master regulators of biological processes and mapping their downstream gene networks are key challenges in systems biology. iRegulon is a software that implements a genome-wide ranking-and-recovery approach to detect enriched transcription factor motifs and their optimal sets of direct targets. The software can be obtained from this website

 

Figure 1 Regulon detection by rank-based motif discovery and motif2TF.

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